PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042572
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 174aa    MW: 19734.1 Da    PI: 10.4516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042572genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.5e-14144755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 ++ErrRR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+L+
  Lus10042572  1 MAERRRREKLNERFIVLRSLVPFV-----TKMDKASILGDAIEYLKQLR 44
                 58*********************8.....8*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.57E-12148No hitNo description
PfamPF000105.1E-12143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.206143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-19162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-19160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-16149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAERRRREKL NERFIVLRSL VPFVTKMDKA SILGDAIEYL KQLRKKIQDL EAKNRQFEMD  60
PQRIGSGSEN KKMRTAAEAK RGKTPTKAKE TSVEVSIIEK DALLELECEH REGLLLDMML  120
KLREMRIEVT TVQSSLSDGV LVAELRAKVK ENGGGKKVSI VEVKRAINGI IQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127ERRRRE
238RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590656.11e-68bHLH transcription factor
SwissprotE3SXU41e-68BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0D2N1T99e-69A0A0D2N1T9_G
TrEMBLA0A0R7EXN01e-68A0A0R7EXN0_MEDTR; BHLH transcription factor
TrEMBLG7IED81e-68G7IED8_MEDTR; BHLH transcription factor
STRINGVIT_07s0104g00090.t017e-64(Vitis vinifera)
STRINGGLYMA02G16670.24e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-47bHLH family protein